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Causes of variation and phenotype development

Inheritance, variation and evolutionVariation and evolution

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Describe the relationship between genotype and phenotype.

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Genotype is the genetic makeup (alleles); phenotype is the observable physical characteristics produced by genotype in a given environment .

Key concepts

What you'll likely be quizzed about

Extent of genetic variation within populations

Genetic variation describes differences in DNA sequences between individuals of the same species. Populations usually show extensive genetic variation because sexual reproduction and inheritance combine different alleles in offspring, making identical genomes rare outside identical twins. The genome contains thousands of genes and two copies of each gene in diploid organisms; small differences in DNA sequences across those genes create variation in traits . Limiting factor: measurement of genetic variation requires sampling across many individuals; observed variation depends on population size and sampling method, so conclusions about ‘extensive’ variation use sufficiently large samples to be reliable .

Causes of variation: genetic, environmental, and combined

Genetic causes: inherited alleles determine traits such as blood group and many simple inherited disorders. Different allele combinations (genotypes) produce different physical characteristics (phenotypes) when genes act largely alone, for example some single-gene traits such as cystic fibrosis or polydactyly . Environmental causes: non-genetic factors alter phenotype without changing DNA sequence. Examples include suntans, scars, tattoos, and hair dye; these produce visible differences that are not inherited. Environmental effects can be direct (damage, staining) or developmental (nutritional deficits affecting growth) . Combined effects: many traits arise from genome–environment interaction. Genotype sets a tendency or range (for example, genetic tendency for tall stature), while environmental inputs such as diet, disease, or mineral availability determine the final phenotype (for example, adequate calcium needed for full genetic height potential) .

Mutations as the source of variants and their effect on phenotype

Mutation is a permanent change to DNA sequence. All new heritable variants arise from mutations that alter bases or change the number of bases in a gene. Single-base substitutions may change one amino acid in a protein; insertions or deletions can shift the reading frame and alter every downstream amino acid, causing major protein changes or loss of function . Effect on phenotype: mutations alter the protein produced by a gene, which can change enzyme activity, structural protein strength, or regulatory functions. Consequences vary: some mutations have no effect, some are harmful (disease-causing), and some are advantageous. The phenotype changes when protein structure or levels change enough to affect cell or organism function .

Genome structure, gene expression and environmental influence on phenotype

The genome is the complete DNA content of an organism and contains coding and non-coding regions. Genes code for proteins via transcription and translation; proteins determine many physical traits. Genotype is the genetic makeup; phenotype is the set of observable characteristics produced by the genotype in a given environment . Environmental modulation: the environment influences which genes are expressed and how proteins are used. Examples include nutritional limits on growth and environmental triggers that change pigmentation. Gene expression can be switched on or off at different life stages, so the same genome can produce different phenotypes under different conditions. Therefore phenotype results from both the genome’s coding potential and environmental modulation of gene expression and development .

Key notes

Important points to keep in mind

Genetic variation is usually extensive because sexual reproduction mixes alleles across generations .

Classify causes of variation as genetic, environmental, or both; provide specific examples for each .

All heritable variants originate from mutations; size and type of mutation determine severity of effect on proteins .

Genotype provides potential; environment and gene expression determine the realised phenotype .

Insertions/deletions often have larger effects than single-base substitutions because of frame shifts .

Measure variation with sufficiently large samples; many continuous traits show normal distribution in large populations .

Some phenotypic changes (scars, suntans) are purely environmental and are not inherited .

Not all mutations are harmful; some are neutral or beneficial and can be important for evolutionary change .

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